hPDB

Protein Databank file format library

Version on this page:	1.2.0
LTS Haskell 9.21:	1.2.0.10
Stackage Nightly 2017-07-25:	1.2.0.9
Latest on Hackage:	1.5.0.0

See all snapshots hPDB appears in

BSD-3-Clause licensed by Michal J. Gajda

Maintained by [email protected]

This version can be pinned in stack with:hPDB-1.2.0@sha256:c049a7a668a12a78ae3a36fa007d367fb22ed117d074b343c86b955df30114e3,5179

Module documentation for 1.2.0

Bio
- Bio.PDB
  - Bio.PDB.EventParser
    - Bio.PDB.EventParser.ExperimentalMethods
    - Bio.PDB.EventParser.HelixTypes
    - Bio.PDB.EventParser.PDBEventParser
    - Bio.PDB.EventParser.PDBEventPrinter
    - Bio.PDB.EventParser.PDBEvents
    - Bio.PDB.EventParser.StrandSense
  - Bio.PDB.Fasta
  - Bio.PDB.IO
    - Bio.PDB.IO.OpenAnyFile
  - Bio.PDB.Iterable
  - Bio.PDB.Structure
    - Bio.PDB.Structure.Elements
    - Bio.PDB.Structure.List
    - Bio.PDB.Structure.Neighbours
    - Bio.PDB.Structure.Vector
  - Bio.PDB.StructureBuilder
  - Bio.PDB.StructurePrinter

Depends on 19 packages(full list with versions):

AC-Vector, base, bytestring, containers, deepseq, directory, ghc-prim, iterable, mmap, mtl, Octree, parallel, QuickCheck, tagged, template-haskell, text, text-format, vector, zlib

Used by 1 package in lts-0.5(full list with versions):

hPDB-examples

hPDB

Haskell PDB file format parser.

Protein Data Bank file format is a most popular format for holding biomolecule data.

This is a very fast parser:

below 7s for the largest entry in PDB - 1HTQ which is over 70MB
as compared with 11s of RASMOL 2.7.5,
or 2m15s of BioPython with Python 2.6 interpreter.

It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython’s PDB parser.

Details on official releases are on Hackage

This package is also a part of Stackage - a stable subset of Hackage.