ViennaRNAParser Hackage Build Status

Currently contains parsers and datatypes for: RNAalifold, RNAcode ,RNAdistance, RNAcofold, RNAfold, RNAplex, RNAup, RNAz.

For more information on the ViennaRNA package refer to http://www.tbi.univie.ac.at/RNA/.

The libary is tested with Version 2.1.9 of the ViennaRNA package.

Changes

-*-change-log-*-
1.3.2 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 20. January 2017
* Fix for RNAalifold systemcall function
1.3.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 23. October 2016
* Improvements to RNAcode parser,
* Improvements to travis testing
1.3.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 6. September 2016
* Added support for new prefilter fields in RNAplex output
1.2.8 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 11. February 2016
* Fixed special character parsing of identifiers in RNAcode
1.2.7 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 4. January 2016
* Added RNAcode parser
* Added stackage yaml file
1.2.6 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 7. September 2015
* Added options to RNAz syscall function
1.2.5 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 9. July 2015
* Fixed parsing of multiple warning fields and optional whitespaces in
RNAz consensus energy
1.2.4 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 8. July 2015
* Fixed surplus whitespace in RNAz parsing function
1.2.3 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 7. July 2015
* Added lower case letters to allowed sequence characters
1.2.2 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 4. July 2015
* Added a new module for shared functions between modules
* Sequence and alignment entry parsing is now in line with IUPAC
letter code
1.2.1 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 3. July 2015
* Included parsing of warning field in RNAz output
1.2.0 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 1. July 2015
* Added Hspec test-suite
* Added RNAcofold parser
1.1.0 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 2. June 2015
* Exposed submodules for imports, added systemcalls for RNAalifold,
RNAfold, RNAz
1.0.1 Florian Eggenhofer <florian.eggenhofer@univie.ac.at> 1. March 2015
* Added Travis CI support
* Added -Wall and -O2 compiler options
* Added RNAfold, RNAalifold, RNAdistance, RNAup parsers
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