BioHMM

Libary for Hidden Markov Models in HMMER3 format.

Latest on Hackage:1.2.0

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3 licensed by Florian Eggenhofer

BioHMM Hackage Build Status

Libary containing parsing and visualisation functions, as well as datastructures for Hidden Markov Models in HMMER3 format.

Changes

-*-change-log-*-
1.2.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 9. June 2017
* Fixed a bug where comparison nodes from the other model were used
* Fixed alignment width
1.1.9 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 9. June 2017
* Changed HMMCompare parsing for more similarity to CMCompare parsing
1.1.8 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 8. June 2017
* Minimal and simple visualisation now also support line mode
* Added show instance for HMMCompareResult
1.1.7 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 7. June 2017
* Improved placment of legend
1.1.6 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 23. May 2017
* Now using sRGB colors, some improvements for color-blind users
1.1.5 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 23. May 2017
* Fixed normalization of newly added colors
1.1.4 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 22. May 2017
* Color scheme is now more robust for grayscale-printing
1.1.3 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 9. May 2017
* Now using same simplified label color scheme as CMDraw
1.1.2 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 7. May 2017
* Labels for columns are now passed to alignment visualisation instead of nodes
* Improved mapping node to column labels
1.1.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 13. April 2017
* Fixed sampling of colors for multiple models
1.0.9 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 13. April 2017
* Improved handling of missing stockholm input
1.0.8 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 7. April 2017
* Fixed a bug with a missing structure parameter character
1.0.7 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 19. March 2017
* Fixed a bug with incorrectly set transition cutoff
1.0.6 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 15. March 2017
* Added cutoff for displayed transition probabilities
* Improvements for detailed node layout
1.0.5 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 26. February 2017
* Added labels and text to simple and minimal node vis
* Flat detail is now minimal detail corresponding to cmvis
1.0.4 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 13. February 2017
* Enabled separate output of stockholm alignment visualisation
* Removed concatenated model visualisation
1.0.3 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 29. December 2016
* Bugfix - reverted broken setting of svgsize
1.0.2 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 29. December 2016
* Added size scaling to HMM drawing functions
1.0.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 22. December 2016
* Bugfix - added Bio.HMMCompare to exported modules
1.0.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 22. December 2016
* Initial release
comments powered byDisqus