BioHMM

Libary for Hidden Markov Models in HMMER3 format.

Latest on Hackage:1.1.1

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3 licensed by Florian Eggenhofer

BioHMM Hackage Build Status

Libary containing parsing and visualisation functions, as well as datastructures for Hidden Markov Models in HMMER3 format.

Changes

-*-change-log-*-
1.1.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 21. April 2017
* Further improvement for model coloring scheme
1.1.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 13. April 2017
* Fixed sampling of colors for multiple models
1.0.9 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 13. April 2017
* Improved handling of missing stockholm input
1.0.8 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 7. April 2017
* Fixed a bug with a missing structure parameter character
1.0.7 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 19. March 2017
* Fixed a bug with incorrectly set transition cutoff
1.0.6 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 15. March 2017
* Added cutoff for displayed transition probabilities
* Improvements for detailed node layout
1.0.5 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 26. February 2017
* Added labels and text to simple and minimal node vis
* Flat detail is now minimal detail corresponding to cmvis
1.0.4 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 13. February 2017
* Enabled separate output of stockholm alignment visualisation
* Removed concatenated model visualisation
1.0.3 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 29. December 2016
* Bugfix - reverted broken setting of svgsize
1.0.2 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 29. December 2016
* Added size scaling to HMM drawing functions
1.0.1 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 22. December 2016
* Bugfix - added Bio.HMMCompare to exported modules
1.0.0 Florian Eggenhofer <egg@informatik.uni-freiburg.de> 22. December 2016
* Initial release
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