Nussinov78

Nussinov78 using the ADPfusion library. http://www.tbi.univie.ac.at/~choener/adpfusion

Latest on Hackage:0.1.0.0

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GPL-3 licensed by Christian Hoener zu Siederdissen, 2011-2012

The Nussinov78 RNA secondary structure prediction algorithm using the ADPfusion framework.

This algorithm is simple enough to be used as a tutorial-type example. It also shows that efficient code is possible. The ADPfusion code compared to C is slower by a factor of only 1.2. We plan to improve upon this.

A number of helper functions currently present in BioInf.Nussinov78 will later move in their own library.

Build using GHC-7.6.1, the new code generator and llvm for best performance.

For comparison, a version of the algorithm written in C is available under C/nussinov.c. Use at least "gcc -O3 nussinov.c".

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