flowsim

Simulate 454 pyrosequencing

http://biohaskell.org/Applications/FlowSim

Latest on Hackage:

0.3.5

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-2.0-only licensed by Ketil Malde

Maintained by Ketil Malde

Provides clonesim, a clone simulator that simulates shotgun genomic clones, and flowsim, that takes the output from clonesim (or any other Fasta-formatted file) and generates simulated reads from them mimicing Roche's 454 pyrosequencing technology, writing output in 454's native SFF format. The flowgram generation is based on empirical distributions derived from real data (although analytic distributions are available too, if you prefer).

The Darcs repository is at http://malde.org/~ketil/biohaskell/flowsim.