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1. readEigenstratSnpStdIn :: forall (m :: Type -> Type) . (MonadThrow m, MonadIO m) => Producer EigenstratSnpEntry m ()

   sequence-formats	SequenceFormats.Eigenstrat

   Function to read a Snp File from StdIn. Returns a Pipes-Producer over the EigenstratSnpEntries.

2. readNextFastaEntry :: MonadIO m => Producer ByteString m () -> m (Chrom, Producer ByteString m (Producer ByteString m ()))

   sequence-formats	SequenceFormats.Fasta

   This function takes a Bytestring-Producer over a Fasta-file, reads in the first header and then returns a produer over its sequence. The return of that producer is the Bytestring-Producer of the rest of the fasta file.

3. readFreqSumFile :: MonadSafe m => FilePath -> m (FreqSumHeader, Producer FreqSumEntry m ())

   sequence-formats	SequenceFormats.FreqSum

   A function to read a freqsum file from a file. Returns a pair of a freqSum Header and a Producer over all lines.

4. readFreqSumStdIn :: (MonadIO m, MonadThrow m) => m (FreqSumHeader, Producer FreqSumEntry m ())

   sequence-formats	SequenceFormats.FreqSum

   A function to read a freqsum file from StdIn. Returns a pair of a freqSum Header and a Producer over all lines.

5. readPileupFromFile :: forall (m :: Type -> Type) . MonadSafe m => FilePath -> Producer PileupRow m ()

   sequence-formats	SequenceFormats.Pileup

   Read pileup from a file.

6. readPileupFromStdIn :: forall (m :: Type -> Type) . (MonadIO m, MonadThrow m) => Producer PileupRow m ()

   sequence-formats	SequenceFormats.Pileup

   Read a pileup-formatted file from StdIn, for reading from an external command `samtools mpileup`.

7. readBimFile :: forall (m :: Type -> Type) . MonadSafe m => FilePath -> Producer EigenstratSnpEntry m ()

   sequence-formats	SequenceFormats.Plink

   Function to read a Bim File from a file. Returns a Pipes-Producer over the EigenstratSnpEntries.

8. readBimStdIn :: forall (m :: Type -> Type) . (MonadThrow m, MonadIO m) => Producer EigenstratSnpEntry m ()

   sequence-formats	SequenceFormats.Plink

   Function to read a Bim File from StdIn. Returns a Pipes-Producer over the EigenstratSnpEntries.

9. readFamFile :: MonadIO m => FilePath -> m [PlinkFamEntry]

   sequence-formats	SequenceFormats.Plink

   Function to read a Plink fam file. Returns the Eigenstrat Individual Entries as list.

10. readPlink :: MonadSafe m => FilePath -> FilePath -> FilePath -> m ([PlinkFamEntry], Producer (EigenstratSnpEntry, GenoLine) m ())

    sequence-formats	SequenceFormats.Plink

    Function to read a full Plink dataset from files. Returns a pair of the Plink Individual Entries, and a joint Producer over the snp entries and the genotypes.

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