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sequence-formats SequenceFormats.FreqSum A Datatype representing the Header
FreqSumHeader :: [String] -> [Int] -> FreqSumHeadersequence-formats SequenceFormats.FreqSum No documentation available.
freqSumEntryToText :: FreqSumEntry -> ByteStringsequence-formats SequenceFormats.FreqSum This function converts a single freqSum entry to a printable freqSum line.
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sequence-formats SequenceFormats.FreqSum A function that writes a freqSum file. Expects the FilePath and the freqSum header as arguments, and then returns a Consumer that accepts freqSum entries.
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sequence-formats SequenceFormats.FreqSum A function to write freqSum data to StdOut. Expects the freqSum header as argument, and then returns a Consumer that accepts freqSum entries.
readFreqSumFile :: MonadSafe m => FilePath -> m (FreqSumHeader, Producer FreqSumEntry m ())sequence-formats SequenceFormats.FreqSum A function to read a freqsum file from a file. Returns a pair of a freqSum Header and a Producer over all lines.
readFreqSumStdIn :: (MonadIO m, MonadThrow m) => m (FreqSumHeader, Producer FreqSumEntry m ())sequence-formats SequenceFormats.FreqSum A function to read a freqsum file from StdIn. Returns a pair of a freqSum Header and a Producer over all lines.
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sequence-formats SequenceFormats.Utils A helper function to parse a text producer, properly reporting all errors to stderr.
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sequence-formats SequenceFormats.Utils No documentation available.
vcfToFreqSumEntry :: MonadThrow m => VCFentry -> m FreqSumEntrysequence-formats SequenceFormats.VCF Converts a VCFentry to the simpler FreqSum format