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  1. module ELynx.Tree.Distribution.TimeOfOrigin

    Creation date: Tue Feb 13 13:16:18 2018. See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005. Distribution of the time of origin for birth and death trees. See corollary 3.3 in the paper cited above.

  2. data TimeOfOriginDistribution

    elynx-tree ELynx.Tree.Distribution.TimeOfOrigin

    Distribution of the time of origin for a phylogenetic tree evolving under the birth and death process and conditioned on observing n leaves today.

  3. module ELynx.Tree.Distribution.TimeOfOriginNearCritical

    Creation date: Tue Feb 13 13:16:18 2018. See Gernhard, T. (2008). The conditioned reconstructed process. Journal of Theoretical Biology, 253(4), 769–778. http://doi.org/10.1016/j.jtbi.2008.04.005. Distribution of the time of origin for birth and death trees. See corollary 3.3 in the paper cited above.

  4. data TimeOfOriginNearCriticalDistribution

    elynx-tree ELynx.Tree.Distribution.TimeOfOriginNearCritical

    Distribution of the time of origin for a phylogenetic tree evolving under the birth and death process and conditioned on observing n leaves today.

  5. data NewickFormat

    elynx-tree ELynx.Tree.Import.Newick

    Newick tree format.

    • Standard: Branch support values are stored in square brackets after branch lengths.
    • IqTree: Branch support values are stored as node names after the closing bracket of forests.
    • RevBayes: Key-value pairs are provided in square brackets after node names as well as branch lengths. NOTE: Key value pairs are ignored.

  6. before :: TreePos e a -> Forest e a

    elynx-tree ELynx.Tree.Zipper

    Forest to the left in reversed order.

  7. encodingForChar :: ISO2022 e => e -> Char -> Maybe (DynEncoding, [Word8])

    encoding Data.Encoding.ISO2022

    No documentation available.

  8. unsafeFromForeignPtr :: forall a (n :: Nat) . ForeignPtr a -> Vec n a

    fixed-vector Data.Vector.Fixed.Storable

    Construct vector from foreign pointer.

  9. unsafeToForeignPtr :: forall (n :: Nat) a . Vec n a -> ForeignPtr a

    fixed-vector Data.Vector.Fixed.Storable

    Get underlying pointer. Data may not be modified through pointer.

  10. MerLookingForGlobalThread :: EventInfo

    ghc-events GHC.RTS.Events

    No documentation available.

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