AlignmentAlgorithms

Collection of alignment algorithms https://github.com/choener/AlignmentAlgorithms

Latest on Hackage:0.1.0.0

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3 licensed by Christian Hoener zu Siederdissen, 2013-2017

Build Status

AlignmentAlgorithms

generalized ADPfusion Homepage

A selection of (sequence) alignment algorithms. Both terminal, and syntactic variables, as well as the index type is not fixed here. This makes it possible to select the correct structure of the grammar here, but bind the required data type for alignment in user code.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

Changes

0.1.0.0

  • removed upper bounds

0.0.2.1

  • addded and updated stack files
  • updated travis.yml

0.0.1.0

  • restructured into DP.Alignment schemes
  • added FMList dependency for better snoc-backtracking
  • single global-alignment example
  • travis-ci integration

0.0.0.1

  • initial checkin
  • just provide the grammar descriptions
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