BiobaseInfernal

Infernal data structures and tools https://github.com/choener/BiobaseInfernal

Latest on Hackage:0.8.1.0

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3 licensed by Christian Hoener zu Siederdissen

Build Status

BiobaseInfernal

Low-level handling of Infernal file formats. Appropriate efficient Haskell data structures for high-performance computations with Infernal covariance models.

In particular, the _states structure provides a numerics-friendly interface to the actual model.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

Changes

0.8.1.0

  • parse CM files with version 0.7 as well
  • ADPfusion-0.5.2

0.8.0.0

  • updated travis file to use stack

0.7.1.0

  • bumped dependencies, compatible to newest BiobaseXNA, PrimitiveArray

0.7.0.0

  • work-in-progress release (some features missing)

  • working CM parsing

  • type defns have changed. using phantom types to specify what kind of model we are working with

  • using conduit instead of iteratee

comments powered byDisqus