BiobaseTrainingData

RNA folding training data http://www.tbi.univie.ac.at/~choener/

Latest on Hackage:

0.1.2.3

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3 licensed by Christian Hoener zu Siederdissen

Maintained by choener@tbi.univie.ac.at

Parameter training for RNA secondary structure prediction tools requires data to train on. Since there are a number of different available formats, and handling them all in the training tools is a pain, we have this library and programs. MkTrainingData transforms different formats and they all produce a common "training data" format. This format is Haskell-readable (and only partially human-readable) line-by-line. Generating additional training data is therefor easy as one can just "cat" together different training files.

Note that several features are designed around extended RNA secondary structures.

Now with some filtering and manipulation options.

Depends on 9 packages:

base, BiobaseDotP, BiobaseFR3D, BiobaseXNA, bytestring, cmdargs, either-unwrap, iteratee, vector

Used by 1 package:

RNAwolf