GenussFold

MCFGs for Genus-1 RNA Pseudoknots

https://github.com/choener/GenussFold

Latest on Hackage:0.0.0.2

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3.0-only licensed by Christian Hoener zu Siederdissen, 2015
Maintained by [email protected]

generalized Algebraic Dynamic Programming

Genus-1 RNA pseudoknot grammars implemented with a multiple context-free language. Compared to the usual implementations that are based on explicit recursions, an implementation based on a formal grammar is much more pleasing to write.

Consult the README for details.

  • BioInf.GenussFold.PKN: Recursive pseudoknots with a simple basepair maximization scoring scheme.