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GPL-3.0-only licensed by Maria Beatriz Walter Costa, Christian Hoener zu Siederdissen, 2017
Determine the most likely order in which single nucleotide
mutations happened between two RNA sequences.
Developed to analyse the HAR 1 region, but agnostic to the
actual sequences and can be used to analyze any RNA sequence
that fits the algorithmic constraints.
As long as the two input RNAs are small enough enough (couple
hundred nucleotides) and the number of mutations is small
enough (around 20-26, since the algorithm is exponential in
this number) the algorithm should work for similar problems
without changes.
We currently only consider point mutations, not in-dels.