SuffixStructures

Suffix array construction http://www.bioinf.uni-leipzig.de/~choener/

Latest on Hackage:0.0.1.0

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BSD3 licensed by Christian Hoener zu Siederdissen

OrderedBits

Build Status

A collection of suffix structures. While we currently only provide a naive construction method, this method should still be acceptably fast in many cases up to around 100M characters -- assuming the input sequence is well behaved in some sense.

Contact

Christian Hoener zu Siederdissen choener@bioinf.uni-leipzig.de Leipzig University, Leipzig, Germany

Changes

0.0.0.1

  • naive suffix arrays
  • Criterion performance measurements
  • QuickCheck
  • travis-ci integration
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