ViennaRNA-bindings

ViennaRNA v2 bindings https://github.com/choener/ViennaRNA-bindings

Latest on Hackage:

0.233.1.2

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

OtherLicense licensed by Christian Hoener zu Siederdissen (bindings) 2013-2017, The ViennaRNA Team (library) 1994-2017

Maintained by choener@tbi.univie.ac.at

ViennaRNA Bindings

This package provides bindings to a subset of the functions provided by the ViennaRNA package, v2. The relevant C functionality is provided directly.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

Changes

0.233.1.2

included C/$ALL.c C/config.h in distribution

0.233.1.1

track ViennaRNA version numbers in 2nd component
bump to v 2.3.3

0.1.6.0

partial bindings to ViennaRNA 2.2.5
tests/properties.hs

0.1.5.0

added stack.yaml file

0.1.4.0

added circular folding and partition function calculations
NOTE due to circular dependencies in fold / fold_vars we currently can not cabal repl on ghc 7.8.{1,2,3}

0.1.3.0

added duplexfold
added a bunch of c/h files due to duplexfold dependencies

0.1.2.1

removed debug statements

0.1.2.0

constrained cofold partition function added

0.1.1.1

export everything in the bindings

0.1.1.0

breaking changes to PartFunc.chs
constrained partition function folding
includes should now all be local (that one was bad)

0.1.0.0

relevant cbits are now provided as part of the cabal package

Depends on:

array, base

Used by 2 packages:

MutationOrder, RNAdesign