ViennaRNA-bindings

ViennaRNA v2 bindings https://github.com/choener/ViennaRNA-bindings

Latest on Hackage:0.233.2.0

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

OtherLicense licensed by Christian Hoener zu Siederdissen (bindings) 2013-2017, The ViennaRNA Team (library) 1994-2017
Maintained by choener@tbi.univie.ac.at

Build Status

ViennaRNA Bindings

This package provides bindings to a subset of the functions provided by the ViennaRNA package, v2. The relevant C functionality is provided directly.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

Changes

0.233.2.0

  • use ByteString.Char8 instead of String

0.233.1.2

  • included C/$ALL.c C/config.h in distribution

0.233.1.1

  • track ViennaRNA version numbers in 2nd component
  • bump to v 2.3.3

0.1.6.0

  • partial bindings to ViennaRNA 2.2.5
  • tests/properties.hs

0.1.5.0

  • added stack.yaml file

0.1.4.0

  • added circular folding and partition function calculations
  • NOTE due to circular dependencies in fold / fold_vars we currently can not cabal repl on ghc 7.8.{1,2,3}

0.1.3.0

  • added duplexfold
  • added a bunch of c/h files due to duplexfold dependencies

0.1.2.1

  • removed debug statements

0.1.2.0

  • constrained cofold partition function added

0.1.1.1

  • export everything in the bindings

0.1.1.0

  • breaking changes to PartFunc.chs
  • constrained partition function folding
  • includes should now all be local (that one was bad)

0.1.0.0

  • relevant cbits are now provided as part of the cabal package

Depends on 3 packages:
array, base, bytestring
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