estreps

Repeats from ESTs

http://blog.malde.org/

Latest on Hackage:0.3.1

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

LicenseRef-GPL licensed by Ketil Malde
Maintained by Ketil Malde
  • rselect - select a random set of sequences from a FASTA file, optinally with random orientation (forward/reverse complement).

  • reps - extract exact k-word repeats based that occur in sequences grouped in different clusters.

The Darcs repository is at: http://malde.org/~ketil/biohaskell/estreps.