fasta

A simple, mindless parser for fasta files.

https://github.com/GregorySchwartz/fasta

LTS Haskell 22.19:	0.10.4.2
Stackage Nightly 2023-12-26:	0.10.4.2
Latest on Hackage:	0.10.4.2

See all snapshots fasta appears in

GPL-3.0-only licensed by Gregory W. Schwartz

Maintained by [email protected]

This version can be pinned in stack with:fasta-0.10.4.2@sha256:006295e2ab35d083a7a8c916f13ac4bdc532b1ccbbc081b8fe1d0220170987ab,3886

Module documentation for 0.10.4.2

Data
- Data.Fasta
  - Data.Fasta.ByteString
    - Data.Fasta.ByteString.Lazy
      - Data.Fasta.ByteString.Lazy.Parse
      - Data.Fasta.ByteString.Lazy.Translation
      - Data.Fasta.ByteString.Lazy.Types
      - Data.Fasta.ByteString.Lazy.Utility
    - Data.Fasta.ByteString.Parse
    - Data.Fasta.ByteString.Translation
    - Data.Fasta.ByteString.Types
    - Data.Fasta.ByteString.Utility
  - Data.Fasta.Category
  - Data.Fasta.String
    - Data.Fasta.String.Parse
    - Data.Fasta.String.Translation
    - Data.Fasta.String.Types
    - Data.Fasta.String.Utility
  - Data.Fasta.Text
    - Data.Fasta.Text.Lazy
      - Data.Fasta.Text.Lazy.Parse
      - Data.Fasta.Text.Lazy.Translation
      - Data.Fasta.Text.Lazy.Types
      - Data.Fasta.Text.Lazy.Utility
    - Data.Fasta.Text.Parse
    - Data.Fasta.Text.Translation
    - Data.Fasta.Text.Types
    - Data.Fasta.Text.Utility
  - Data.Fasta.Utility

Depends on 14 packages(full list with versions):

attoparsec, base, bytestring, containers, foldl, lens, parsec, pipes, pipes-attoparsec, pipes-bytestring, pipes-group, pipes-text, split, text

Used by 3 packages in lts-9.1(full list with versions):

blosum, diversity, modify-fasta

The fasta type specifically split by String, Text, Lazy Text, ByteString, and Lazy ByteString for simplicity and ease of use, although lacking many features of other parsers. Mainly for use with bioinformatics applications which are very general and need no conversion overhead.