BiobaseNewick
Newick file format parser.
https://github.com/choener/BiobaseNewick
| LTS Haskell 12.26: | 0.0.0.2 |
| Stackage Nightly 2018-09-28: | 0.0.0.2 |
| Latest on Hackage: | 0.0.0.2 |
Maintained by choener@bioinf.uni-leipzig.de
This version can be pinned in stack with:
BiobaseNewick-0.0.0.2@sha256:4006ede0492b50cf0ab8ec49166e0ca3553891e61a86841feabc35c914cc2bb5,3315Module documentation for 0.0.0.2
Depends on 15 packages(full list with versions):
Used by 2 packages in lts-9.21(full list with versions):
BiobaseNewick
This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled with the node name (or an empty string for anonymous nodes) and a distance (0 if not given).
Newick trees can be ex- and imported into the Newick tree format. We also have serialization to the usual serializers.
This package was written mostly to complement a course a Univ. Leipzig. There is a more comprehensive package written by R. Newton http://hackage.haskell.org/package/phybin which you might want instead.
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/