BiobaseNewick

Newick file format parser. https://github.com/choener/BiobaseNewick

Latest on Hackage:0.0.0.1

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

BSD3 licensed by Christian Hoener zu Siederdissen

Build Status

BiobaseNewick

This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled with the node name (or an empty string for anonymous nodes) and a distance (0 if not given).

Newick trees can be ex- and imported into the Newick tree format. We also have serialization to the usual serializers.

This package was written mostly to complement a course a Univ. Leipzig. There is a more comprehensive package written by R. Newton http://hackage.haskell.org/package/phybin which you might want instead.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

Changes

0.0.0.1

  • initial creation
  • travis-ci integration
  • simple test framework
  • depends on ForestStructures for conversion into efficient static forest
comments powered byDisqus