BiobaseNewick
Newick file format parser.
https://github.com/choener/BiobaseNewick
| LTS Haskell 24.24: | 0.0.0.2@rev:1 |
| Stackage Nightly 2025-12-16: | 0.0.0.2@rev:1 |
| Latest on Hackage: | 0.0.0.2@rev:1 |
Maintained by [email protected]
This version can be pinned in stack with:
BiobaseNewick-0.0.0.2@sha256:b024b37bdc07873831f32a14eea3622f9391dd12a6f956efa0361ab3b82fb960,3456Module documentation for 0.0.0.2
- Biobase
- Biobase.Newick
- Biobase.Newick.Export
- Biobase.Newick.Import
- Biobase.Newick.StaticForest
- Biobase.Newick.Types
- Biobase.Newick
Depends on 15 packages(full list with versions):
Used by 1 package in nightly-2024-01-10(full list with versions):
BiobaseNewick
This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled with the node name (or an empty string for anonymous nodes) and a distance (0 if not given).
Newick trees can be ex- and imported into the Newick tree format. We also have serialization to the usual serializers.
This package was written mostly to complement a course a Univ. Leipzig. There is a more comprehensive package written by R. Newton http://hackage.haskell.org/package/phybin which you might want instead.
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
[email protected]
http://www.bioinf.uni-leipzig.de/~choener/