BSD-3-Clause licensed by Christian Hoener zu Siederdissen
This version can be pinned in stack with:BiobaseFasta-0.4.0.1@sha256:febb9e4a2b36953b606875d00e6e3cb3b48f88494170e0aa0b783003b57d2bff,3683
Module documentation for 0.4.0.1
Depends on 11 packages
(full list with versions ) :
base ,
BiobaseFasta ,
BiobaseTypes ,
bytestring ,
DPutils ,
lens ,
optparse-applicative ,
resourcet ,
streaming ,
streaming-bytestring ,
string-conversions
BiobaseFasta
A Haskell library for FASTA-file handling.
The version does streaming using the ‘streaming’ library.
The library is, in general, in a “preview” state. In cases where you need to
scan large FASTA files fast and with low memory overhead, the functions within
should already be useable enough.
The wikipedia has information on the format:
http://en.wikipedia.org/wiki/FASTA_format
Contact
Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
[email protected]
http://www.bioinf.uni-leipzig.de/~choener/
0.4.0.1
streaming-bytestring >= 0.2
cleanup of older code
0.2.0.0
this version now uses the streaming library
0.1.0.0
chunk-based conduit parser
small number of conduit functions for different chunk types
quickcheck and unit tests
travis-ci integration
included stack.yaml (and working build)
0.0.1.0
conduit-based (0.5.6) parsing with windows
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