BiobaseFasta

conduit-based FASTA parser http://www.tbi.univie.ac.at/~choener/

Latest on Hackage:0.0.1.0

This package is not currently in any snapshots. If you're interested in using it, we recommend adding it to Stackage Nightly. Doing so will make builds more reliable, and allow stackage.org to host generated Haddocks.

GPL-3 licensed by Christian Hoener zu Siederdissen

Conduit-based handling of FASTA files. This library provides a streaming interface. The user selects a window size, then handles the window. For each window, the previous (past) window is available, in case some data sits on the boundary between windows.

FastaTool is a simple tool providing information on FASTA files, and allowing to extract sequences and subsequences.

The library is, in general, in a "preview" state. In cases where you need to scan large FASTA files fast and with low memory overhead, the streamFasta function, however, should already be useable enough.

Changes

0.0.1.0
* conduit-based (0.5.6) parsing with windows
comments powered byDisqus