BSD-3-Clause licensed by Christian Hoener zu Siederdissen, 2015 - 2021
This version can be pinned in stack with:BiobaseTypes-0.2.1.0@sha256:f7f6bc0189016086ed8e135fd2aac31a9f15f730101a2574236c6bffc8e4bc03,4619

github action: master github action: hackage

BiobaseTypes

A bunch of types in use in different modules:

  • numerical small and large numbers
  • Gibbs free energy change
  • phantom-typed linear indices: these encode the (rather annoying) habit of computational biology of having both 0-based and 1-based data

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

Changes

0.2.1.0

  • CI/hackage github actions
  • dependency updates

0.2.0.1

  • minor version bumped due to OrderedBits

0.2.0.0

  • unified treatment of bio sequences with one phantom-typed newtype.

0.1.4.0

  • changes to indexing and others
  • some changes that probably require a bump

0.1.3.0

  • “biostring” wrappers (ByteString based RNA, DNA, … sequences)

0.1.2.1

  • increased minimal required PrimitiveArray version
  • removed almost all upper bounds
  • removed ghc 7.8.4 as viable compiler

0.1.2.0

  • NFData instances

0.1.1.0

  • added Biobase.Types.Odds module (from the BiobaseBlast package)

0.1.0.0

  • re-introduced the types library for bioinformatics
  • travis-ci integration

0.0.x,y

  • old variant; completely rewritten by now