BiobaseBlast

BLAST-related tools

https://github.com/choener/BiobaseBlast

Stackage Nightly 2022-02-07:	0.3.3.0
Latest on Hackage:	0.3.3.0

See all snapshots BiobaseBlast appears in

GPL-3.0-only licensed by Christian Hoener zu Siederdissen, Florian Eggenhofer

Maintained by choener@bioinf.uni-leipzig.de

This version can be pinned in stack with:BiobaseBlast-0.3.3.0@sha256:5eecec73254012d17fe0d515fd91a01d122184f15afc3d0685ed0c04ad0b7b2d,6896

Module documentation for 0.3.3.0

Biobase
- Biobase.BLAST
  - Biobase.BLAST.Import
  - Biobase.BLAST.Types
- Biobase.SubstMatrix

Depends on 22 packages(full list with versions):

BiobaseBlast

This library contains BLAST-related functionality.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/

Changes

0.3.3.0

Compatibility with GHC 9
Switched testing to github actions

0.3.1.0

Blast datatype supports optional taxonomy id

0.3.0.1

Fix for newly ambigous ? operator export from attoparsec and aeson>=1.4.4.0 in Import module

0.3.0.0

generalized IO-based functions to MonadIO. This should be non-breaking in most cases.
Added parsing functionality for JSON2 NCBI BLAST+ output
currently tags all DNA/AA letters with ()

0.2.0.0

Added parsing functionality for tabular NCBI BLAST+ output

0.1.0.0

more efficient tables (using PrimitiveArray)
updated to newest PrimitiveArray & BiobaseXNA
travis.yml added

0.0.0.1

initial commit