hPDB
Protein Databank file format library
https://github.com/BioHaskell/hPDB
| Version on this page: | 1.2.0 |
| LTS Haskell 9.21: | 1.2.0.10 |
| Stackage Nightly 2017-07-25: | 1.2.0.9 |
| Latest on Hackage: | 1.5.0.0 |
Maintained by mjgajda@googlemail.com
This version can be pinned in stack with:
hPDB-1.2.0@sha256:c049a7a668a12a78ae3a36fa007d367fb22ed117d074b343c86b955df30114e3,5179Module documentation for 1.2.0
- Bio
Depends on 19 packages(full list with versions):
AC-Vector, base, bytestring, containers, deepseq, directory, ghc-prim, iterable, mmap, mtl, Octree, parallel, QuickCheck, tagged, template-haskell, text, text-format, vector, zlib
Used by 1 package in nightly-2014-12-14(full list with versions):
hPDB
Haskell PDB file format parser.
Protein Data Bank file format is a most popular format for holding biomolecule data.
This is a very fast parser:
- below 7s for the largest entry in PDB - 1HTQ which is over 70MB
- as compared with 11s of RASMOL 2.7.5,
- or 2m15s of BioPython with Python 2.6 interpreter.
It is aimed to not only deliver event-based interface, but also a high-level data structure for manipulating data in spirit of BioPython’s PDB parser.
Details on official releases are on Hackage
This package is also a part of Stackage - a stable subset of Hackage.